The normal Lymph Node. Supplemental Data
Description
Normal human lymph nodes and tonsils, multiplexed with the MILAN technique, analyzed with BRAQUE.
Files
Steps to reproduce
CyBorgh - Image segmentation and analysis function in Matlab(R2024a) Drag and drop the file.m in Matlab editor INPUT: immagine_c : input image (Dapi) to be segmented (upload in Matlab) mis_tile : [height, width] of tile size for subdivision OUTPUT: Generates segmentation images and saves data tables to CSV/MAT files (Mean value, AreaCell, Spatial coordinates, LabelMarker) (put all images including input to be segmented (Dapi) in the same folder (Images) ), funtion must be located outside this folder, at the same level Run the function in the command window: e.g. CyBorgh(cdata,[1000,1000]) Suggested computing capacity for a dataset of 85 image.tiff of 363MB each: CPU : Intel(R) Xeon(R) Gold 5118 CPU @ 2.30GHz 2.29 GHz (2 processor) RAM 176GB
Institutions
Departments
Categories
Funding
Regione Lombardia
POR FESR 2014–2020
Additional Metadata for University of Milano - Bicocca
| Language | English |
| Date the data was collected | 2025-07-23T22:00:00.000Z |
| ERC Keywords | PE1_18 Scientific computing and data processing, PE6_13 Bioinformatics, biocomputing, and DNA and molecular computation, LS2_9 Proteomics, LS2_12 Bioinformatics, LS2_15 Systems biology, LS3_11 Tissue organisation and morphogenesis in animals and plants (including biophysical approaches) |
| SSD Classification | MED/04 - PATOLOGIA GENERALE, MED/08 - ANATOMIA PATOLOGICA, BIO/16 - ANATOMIA UMANA, MAT/04 - MATEMATICHE COMPLEMENTARI |
| Geolocation | Italy |